HL_9MKK_054

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKK_054 not in the Motif Atlas

Geometric match to HL_8B0X_056

Geometric discrepancy: 0.2827

The information below is about HL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9MKK|1|a|C|885
9MKK|1|a|A|886
9MKK|1|a|U|887
9MKK|1|a|C|888
9MKK|1|a|C|889
9MKK|1|a|C|890
9MKK|1|a|G|891

Current chains

Chain a

23S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13