HL_9MKK_060

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9MKK|1|a|U|1396, 9MKK|1|a|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKK_060 not in the Motif Atlas

Geometric match to HL_5J7L_168

Geometric discrepancy: 0.2263

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9MKK|1|a|G|1389
9MKK|1|a|U|1390
9MKK|1|a|U|1391
9MKK|1|a|A|1392
9MKK|1|a|A|1393
9MKK|1|a|U|1394
9MKK|1|a|A|1395
9MKK|1|a|U|1396
9MKK|1|a|U|1397
9MKK|1|a|C|1398

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23