HL_9MNC_016

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

9MNC|1|L5|C|1325

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MNC_016 not in the Motif Atlas

Homologous match to HL_8GLP_119

Geometric discrepancy: 0.0546

The information below is about HL_8GLP_119

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9MNC|1|L5|U|1317
9MNC|1|L5|C|1318
9MNC|1|L5|U|1319
9MNC|1|L5|U|1320
9MNC|1|L5|G|1321
9MNC|1|L5|1MA|1322
9MNC|1|L5|A|1323
9MNC|1|L5|A|1324
9MNC|1|L5|C|1325
9MNC|1|L5|A2M|1326

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LI

Large ribosomal subunit protein eL32

Chain La

Large ribosomal subunit protein uL15

Chain Lb

Large ribosomal subunit protein eL29