HL_9MNC_099

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

AUUGCAAUUAU(PSU)

Length

12 nucleotides

Bulged bases

9MNC|1|S2|U|1621, 9MNC|1|S2|U|1622, 9MNC|1|S2|A|1623

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MNC|1|S2|A|1614
9MNC|1|S2|U|1615
9MNC|1|S2|U|1616
9MNC|1|S2|G|1617
9MNC|1|S2|C|1618
9MNC|1|S2|A|1619
9MNC|1|S2|A|1620
9MNC|1|S2|U|1621
9MNC|1|S2|U|1622
9MNC|1|S2|A|1623
9MNC|1|S2|U|1624
9MNC|1|S2|PSU|1625

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein uS19

Chain ST

Small ribosomal subunit protein uS13

Chain Sf

Small ribosomal subunit protein uS14