HL_9MOR_013

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9MOR|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MOR_013 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.2693

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9MOR|1|1|G|410
9MOR|1|1|G|411
9MOR|1|1|A|412
9MOR|1|1|C|413
9MOR|1|1|C|414
9MOR|1|1|A|415
9MOR|1|1|U|416
9MOR|1|1|C|417

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15