HL_9MOR_056

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MOR_056 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.3579

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9MOR|1|1|U|2324
9MOR|1|1|G|2325
9MOR|1|1|C|2326
9MOR|1|1|A|2327
9MOR|1|1|A|2328
9MOR|1|1|U|2329
9MOR|1|1|G|2330
9MOR|1|1|G|2331

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain E

Large ribosomal subunit protein uL5

Chain W

Large ribosomal subunit protein bL27