HL_9MOR_066

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9MOR|1|1|G|2751, 9MOR|1|1|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MOR_066 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.2955

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9MOR|1|1|C|2745
9MOR|1|1|U|2746
9MOR|1|1|G|2747
9MOR|1|1|A|2748
9MOR|1|1|A|2749
9MOR|1|1|A|2750
9MOR|1|1|G|2751
9MOR|1|1|C|2752
9MOR|1|1|A|2753
9MOR|1|1|U|2754
9MOR|1|1|C|2755
9MOR|1|1|U|2756
9MOR|1|1|A|2757
9MOR|1|1|A|2758
9MOR|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

Large ribosomal subunit protein uL6

Chain J

Large ribosomal subunit protein uL13

Chain f

50S ribosomal protein L36