HL_9MQ4_006

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9MQ4|1|1|A|196, 9MQ4|1|1|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MQ4_006 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1076

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9MQ4|1|1|G|194
9MQ4|1|1|A|195
9MQ4|1|1|A|196
9MQ4|1|1|A|197
9MQ4|1|1|C|198
9MQ4|1|1|A|199
9MQ4|1|1|U|200
9MQ4|1|1|C|201

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15

Chain X

50S ribosomal protein L28