HL_9MQ4_010

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

9MQ4|1|1|U|321, 9MQ4|1|1|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MQ4_010 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.0739

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9MQ4|1|1|G|319
9MQ4|1|1|A|320
9MQ4|1|1|U|321
9MQ4|1|1|A|322
9MQ4|1|1|C|323

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL4