HL_9MQ4_015

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

9MQ4|1|1|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MQ4_015 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.1382

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9MQ4|1|1|C|487
9MQ4|1|1|G|488
9MQ4|1|1|G|489
9MQ4|1|1|C|490
9MQ4|1|1|G|491
9MQ4|1|1|A|492
9MQ4|1|1|G|493

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein uL22