HL_9MQ4_016

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

9MQ4|1|1|U|546, 9MQ4|1|1|A|547, 9MQ4|1|1|G|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MQ4_016 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2625

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9MQ4|1|1|C|544
9MQ4|1|1|U|545
9MQ4|1|1|U|546
9MQ4|1|1|A|547
9MQ4|1|1|G|548
9MQ4|1|1|G|549

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein bL21