HL_9MQ4_047

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MQ4_047 not in the Motif Atlas

Homologous match to HL_5J7L_180

Geometric discrepancy: 0.3923

The information below is about HL_5J7L_180

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9MQ4|1|1|C|1868
9MQ4|1|1|G|1869
9MQ4|1|1|C|1870
9MQ4|1|1|A|1871
9MQ4|1|1|A|1872
9MQ4|1|1|G|1873

Current chains

Chain 1

23S ribosomal RNA

Nearby chains