HL_9MQ4_077

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MQ4_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0903

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9MQ4|1|2|A|320
9MQ4|1|2|A|321
9MQ4|1|2|C|322
9MQ4|1|2|U|323
9MQ4|1|2|G|324
9MQ4|1|2|A|325
9MQ4|1|2|G|326
9MQ4|1|2|A|327
9MQ4|1|2|C|328
9MQ4|1|2|A|329
9MQ4|1|2|C|330
9MQ4|1|2|G|331
9MQ4|1|2|G|332
9MQ4|1|2|U|333

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20