HL_9MQ4_097

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MQ4_097 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.1053

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9MQ4|1|2|C|1314
9MQ4|1|2|U|1315
9MQ4|1|2|G|1316
9MQ4|1|2|C|1317
9MQ4|1|2|A|1318
9MQ4|1|2|A|1319
9MQ4|1|2|C|1320
9MQ4|1|2|U|1321
9MQ4|1|2|C|1322
9MQ4|1|2|G|1323

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S13

Chain s

Small ribosomal subunit protein uS14

Chain x

Small ribosomal subunit protein uS19