HL_9MQ4_103
3D structure
- PDB id
- 9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Damaged 70S ribosome with PrfH bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9MQ4|1|5|C|15, 9MQ4|1|5|C|16, 9MQ4|1|5|U|17, 9MQ4|1|5|G|18, 9MQ4|1|5|G|19, 9MQ4|1|5|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9MQ4_103 not in the Motif Atlas
- Homologous match to HL_5B63_003
- Geometric discrepancy: 0.2176
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9MQ4|1|5|C|12
9MQ4|1|5|A|13
9MQ4|1|5|G|14
9MQ4|1|5|C|15
9MQ4|1|5|C|16
9MQ4|1|5|U|17
9MQ4|1|5|G|18
9MQ4|1|5|G|19
9MQ4|1|5|U|20
9MQ4|1|5|A|21
9MQ4|1|5|G|22
Current chains
- Chain 5
- P-tRNA, E-tRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- Large ribosomal subunit protein uL5
Coloring options: