HL_9MR4_027

3D structure

PDB id

9MR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC: Ribosome nascent chain complex(Oxa1L)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9MR4|1|5|C|1676, 9MR4|1|5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MR4_027 not in the Motif Atlas

Homologous match to HL_9H3G_028

Geometric discrepancy: 0.1916

The information below is about HL_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.4

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

9MR4|1|5|C|1675
9MR4|1|5|C|1676
9MR4|1|5|U|1677
9MR4|1|5|C|1678
9MR4|1|5|A|1679
9MR4|1|5|G|1680

Current chains

Chain 5

28S rRNA

Nearby chains

Chain a

60S ribosomal protein L27a

Chain b

Large ribosomal subunit protein eL29

Chain o

Large ribosomal subunit protein eL42