HL_9MTP_016

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

9MTP|1|1A|C|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTP_016 not in the Motif Atlas

Geometric match to HL_9DFE_016

Geometric discrepancy: 0.0444

The information below is about HL_9DFE_016

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9MTP|1|1A|U|566
9MTP|1|1A|A|567
9MTP|1|1A|U|568
9MTP|1|1A|U|569
9MTP|1|1A|G|570
9MTP|1|1A|A|571
9MTP|1|1A|A|572
9MTP|1|1A|G|573
9MTP|1|1A|C|574
9MTP|1|1A|A|575

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21