HL_9MTP_025

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

9MTP|1|1A|U|958, 9MTP|1|1A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTP_025 not in the Motif Atlas

Geometric match to HL_9DFE_025

Geometric discrepancy: 0.0664

The information below is about HL_9DFE_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9MTP|1|1A|C|955
9MTP|1|1A|G|956
9MTP|1|1A|A|957
9MTP|1|1A|U|958
9MTP|1|1A|A|959
9MTP|1|1A|A|960
9MTP|1|1A|C|961
9MTP|1|1A|G|962

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1Q

50S ribosomal protein L16