HL_9MTP_034

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9MTP|1|1A|U|1396, 9MTP|1|1A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTP_034 not in the Motif Atlas

Geometric match to HL_9DFE_034

Geometric discrepancy: 0.0555

The information below is about HL_9DFE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9MTP|1|1A|G|1389
9MTP|1|1A|U|1390
9MTP|1|1A|U|1391
9MTP|1|1A|A|1392
9MTP|1|1A|A|1393
9MTP|1|1A|U|1394
9MTP|1|1A|A|1395
9MTP|1|1A|U|1396
9MTP|1|1A|U|1397
9MTP|1|1A|C|1398

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23