HL_9MTP_148

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9MTP|1|2A|A|2030, 9MTP|1|2A|A|2031, 9MTP|1|2A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTP_148 not in the Motif Atlas

Geometric match to HL_9DFE_048

Geometric discrepancy: 0.0598

The information below is about HL_9DFE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9MTP|1|2A|G|2027
9MTP|1|2A|U|2028
9MTP|1|2A|G|2029
9MTP|1|2A|A|2030
9MTP|1|2A|A|2031
9MTP|1|2A|G|2032
9MTP|1|2A|A|2033
9MTP|1|2A|U|2034
9MTP|1|2A|G|2035
9MTP|1|2A|C|2036

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2V

50S ribosomal protein L21