HL_9MTP_152

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

9MTP|1|2A|A|2268, 9MTP|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTP_152 not in the Motif Atlas

Geometric match to HL_9DFE_052

Geometric discrepancy: 0.0546

The information below is about HL_9DFE_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9MTP|1|2A|C|2264
9MTP|1|2A|U|2265
9MTP|1|2A|A|2266
9MTP|1|2A|A|2267
9MTP|1|2A|A|2268
9MTP|1|2A|A|2269
9MTP|1|2A|G|2270
9MTP|1|2A|G|2271
9MTP|1|2A|U|2272
9MTP|1|2A|A|2273
9MTP|1|2A|A|2274
9MTP|1|2A|C|2275
9MTP|1|2A|G|2276

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16