HL_9MTP_201

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

AAAGCGG(H2U)(H2U)AU

Length

11 nucleotides

Bulged bases

9MTP|1|2x|G|18, 9MTP|1|2x|G|19, 9MTP|1|2x|H2U|20, 9MTP|1|2x|H2U|21

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTP_201 not in the Motif Atlas

Geometric match to HL_1U0B_001

Geometric discrepancy: 0.0995

The information below is about HL_1U0B_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07480.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

3

Unit IDs

9MTP|1|2x|A|12
9MTP|1|2x|A|13
9MTP|1|2x|A|14
9MTP|1|2x|G|15
9MTP|1|2x|C|16
9MTP|1|2x|G|18
9MTP|1|2x|G|19
9MTP|1|2x|H2U|20
9MTP|1|2x|H2U|21
9MTP|1|2x|A|22
9MTP|1|2x|U|23

Current chains

Chain 2x

P-site Peptidyl-tRNA fMEAAAKC-tRNAcys RNA-part

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2G

50S ribosomal protein L5