HL_9MTR_109

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

9MTR|1|2A|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTR_109 not in the Motif Atlas

Geometric match to HL_4V9F_007

Geometric discrepancy: 0.2236

The information below is about HL_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81964.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9MTR|1|2A|A|225
9MTR|1|2A|G|226
9MTR|1|2A|A|227
9MTR|1|2A|A|228
9MTR|1|2A|A|229
9MTR|1|2A|U|230

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2P

50S ribosomal protein L15