HL_9MTS_012

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

9MTS|1|1A|G|386, 9MTS|1|1A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTS_012 not in the Motif Atlas

Geometric match to HL_9DFE_012

Geometric discrepancy: 0.0747

The information below is about HL_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9MTS|1|1A|G|382
9MTS|1|1A|U|383
9MTS|1|1A|U|384
9MTS|1|1A|C|385
9MTS|1|1A|G|386
9MTS|1|1A|U|387
9MTS|1|1A|G|388
9MTS|1|1A|G|389
9MTS|1|1A|A|390
9MTS|1|1A|G|391
9MTS|1|1A|C|392

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1P

50S ribosomal protein L15