HL_9MTS_074

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

9MTS|1|1a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTS_074 not in the Motif Atlas

Geometric match to HL_4LFB_006

Geometric discrepancy: 0.0756

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9MTS|1|1a|G|259
9MTS|1|1a|G|260
9MTS|1|1a|U|261
9MTS|1|1a|A|262
9MTS|1|1a|A|263
9MTS|1|1a|U|264
9MTS|1|1a|G|265
9MTS|1|1a|G|266
9MTS|1|1a|C|267

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1q

30S ribosomal protein S17

Chain 1t

30S ribosomal protein S20