HL_9MTT_093

3D structure

PDB id

9MTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9MTT|1|1a|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTT_093 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.1199

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9MTT|1|1a|G|1089
9MTT|1|1a|U|1090
9MTT|1|1a|U|1091
9MTT|1|1a|A|1092
9MTT|1|1a|A|1093
9MTT|1|1a|G|1094
9MTT|1|1a|U|1095
9MTT|1|1a|C|1096

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1b

30S ribosomal protein S2

Chain 1g

30S ribosomal protein S7