HL_9N2B_006

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9N2B|1|16|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0712

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9N2B|1|16|G|259
9N2B|1|16|G|260
9N2B|1|16|U|261
9N2B|1|16|A|262
9N2B|1|16|A|263
9N2B|1|16|C|264
9N2B|1|16|G|265
9N2B|1|16|G|266
9N2B|1|16|C|267

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SQ

30S ribosomal protein S17

Chain ST

30S ribosomal protein S20