HL_9N2B_008

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0663

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9N2B|1|16|A|320
9N2B|1|16|A|321
9N2B|1|16|C|322
9N2B|1|16|U|323
9N2B|1|16|G|324
9N2B|1|16|A|325
9N2B|1|16|G|326
9N2B|1|16|A|327
9N2B|1|16|C|328
9N2B|1|16|A|329
9N2B|1|16|C|330
9N2B|1|16|G|331
9N2B|1|16|G|332
9N2B|1|16|U|333

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SP

30S ribosomal protein S16

Chain ST

30S ribosomal protein S20