HL_9N2B_015
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9N2B_015 not in the Motif Atlas
- Homologous match to HL_5J7L_015
- Geometric discrepancy: 0.0704
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9N2B|1|16|C|689
9N2B|1|16|G|690
9N2B|1|16|G|691
9N2B|1|16|U|692
9N2B|1|16|G|693
9N2B|1|16|A|694
9N2B|1|16|A|695
9N2B|1|16|A|696
9N2B|1|16|U|697
9N2B|1|16|G|698
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain 23
- Large subunit ribosomal RNA; LSU rRNA
- Chain SG
- 30S ribosomal protein S7
- Chain SK
- Small ribosomal subunit protein uS11
- Chain SU
- 30S ribosomal protein S21
- Chain mR
- Synthetic messenger RNA (mRNA) 60 bp in length
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