3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
UGUGAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9N2B_024 not in the Motif Atlas
Homologous match to HL_5J7L_023
Geometric discrepancy: 0.0611
The information below is about HL_5J7L_023
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

9N2B|1|16|U|1076
9N2B|1|16|G|1077
9N2B|1|16|U|1078
9N2B|1|16|G|1079
9N2B|1|16|A|1080
9N2B|1|16|A|1081

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SB
30S ribosomal protein S2
Chain SE
30S ribosomal protein S5

Coloring options:


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