3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
9N2B|1|23|A|125
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9N2B_035 not in the Motif Atlas
Homologous match to HL_5J7L_136
Geometric discrepancy: 0.0693
The information below is about HL_5J7L_136
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_82710.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

9N2B|1|23|G|123
9N2B|1|23|G|124
9N2B|1|23|A|125
9N2B|1|23|A|126
9N2B|1|23|A|127
9N2B|1|23|C|128

Current chains

Chain 23
23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LW
50S ribosomal protein L23
Chain Lh
50S ribosomal protein L34

Coloring options:


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