HL_9N2B_066

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9N2B|1|23|A|1453, 9N2B|1|23|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_066 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.0989

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9N2B|1|23|C|1451
9N2B|1|23|G|1452
9N2B|1|23|A|1453
9N2B|1|23|C|1454
9N2B|1|23|G|1455
9N2B|1|23|G|1456
9N2B|1|23|U|1457
9N2B|1|23|U|1458
9N2B|1|23|G|1459

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LQ

50S ribosomal protein L17