HL_9N2B_078
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUAAC(3TD)AUAAC
- Length
- 11 nucleotides
- Bulged bases
- 9N2B|1|23|A|1913
- QA status
- Modified nucleotides: 3TD
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9N2B_078 not in the Motif Atlas
- Homologous match to HL_9DFE_046
- Geometric discrepancy: 0.1374
- The information below is about HL_9DFE_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9N2B|1|23|G|1910
9N2B|1|23|U|1911
9N2B|1|23|A|1912
9N2B|1|23|A|1913
9N2B|1|23|C|1914
9N2B|1|23|3TD|1915
9N2B|1|23|A|1916
9N2B|1|23|U|1917
9N2B|1|23|A|1918
9N2B|1|23|A|1919
9N2B|1|23|C|1920
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain 16
- Small subunit ribosomal RNA; SSU rRNA
- Chain Pt
- Transfer RNA; tRNA
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