HL_9N2B_079

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9N2B|1|23|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_079 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.066

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9N2B|1|23|G|1949
9N2B|1|23|G|1950
9N2B|1|23|U|1951
9N2B|1|23|A|1952
9N2B|1|23|A|1953
9N2B|1|23|G|1954
9N2B|1|23|U|1955
9N2B|1|23|U|1956
9N2B|1|23|C|1957

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 16

Small subunit ribosomal RNA; SSU rRNA

Chain LN

50S ribosomal protein L14