HL_9N2B_083

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9N2B|1|23|A|2268, 9N2B|1|23|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_083 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0594

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9N2B|1|23|C|2264
9N2B|1|23|U|2265
9N2B|1|23|A|2266
9N2B|1|23|A|2267
9N2B|1|23|A|2268
9N2B|1|23|G|2269
9N2B|1|23|A|2270
9N2B|1|23|G|2271
9N2B|1|23|U|2272
9N2B|1|23|A|2273
9N2B|1|23|A|2274
9N2B|1|23|C|2275
9N2B|1|23|G|2276

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LP

50S ribosomal protein L16

Chain La

50S ribosomal protein L27