HL_9N2B_088

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9N2B|1|23|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_088 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0618

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9N2B|1|23|U|2404
9N2B|1|23|G|2405
9N2B|1|23|A|2406
9N2B|1|23|A|2407
9N2B|1|23|U|2408
9N2B|1|23|G|2409
9N2B|1|23|G|2410
9N2B|1|23|A|2411
9N2B|1|23|A|2412
9N2B|1|23|G|2413

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LO

50S ribosomal protein L15