HL_9N2B_090

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9N2B|1|23|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_090 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0719

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9N2B|1|23|U|2528
9N2B|1|23|G|2529
9N2B|1|23|A|2530
9N2B|1|23|A|2531
9N2B|1|23|G|2532
9N2B|1|23|U|2533
9N2B|1|23|A|2534
9N2B|1|23|G|2535

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LF

50S ribosomal protein L6

Chain Lj

50S ribosomal protein L36