HL_9N2B_095
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9N2B|1|23|G|2751, 9N2B|1|23|C|2755
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9N2B_095 not in the Motif Atlas
- Homologous match to HL_5J7L_199
- Geometric discrepancy: 0.063
- The information below is about HL_5J7L_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
9N2B|1|23|C|2745
9N2B|1|23|U|2746
9N2B|1|23|G|2747
9N2B|1|23|A|2748
9N2B|1|23|A|2749
9N2B|1|23|A|2750
9N2B|1|23|G|2751
9N2B|1|23|C|2752
9N2B|1|23|A|2753
9N2B|1|23|U|2754
9N2B|1|23|C|2755
9N2B|1|23|U|2756
9N2B|1|23|A|2757
9N2B|1|23|A|2758
9N2B|1|23|G|2759
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LF
- 50S ribosomal protein L6
- Chain LM
- 50S ribosomal protein L13
- Chain Lj
- 50S ribosomal protein L36
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