HL_9N2B_103
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- G(OMC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9N2B_103 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.0663
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
9N2B|1|Pt|G|32
9N2B|1|Pt|OMC|33
9N2B|1|Pt|U|34
9N2B|1|Pt|C|35
9N2B|1|Pt|A|36
9N2B|1|Pt|U|37
9N2B|1|Pt|A|38
9N2B|1|Pt|A|39
9N2B|1|Pt|C|40
Current chains
- Chain Pt
- N-formyl-methionine initiator tRNA (fMet-tRNAfMet)
Nearby chains
- Chain 16
- Small subunit ribosomal RNA; SSU rRNA
- Chain SI
- 30S ribosomal protein S9
- Chain mR
- Synthetic messenger RNA (mRNA) 60 bp in length
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