HL_9N2C_006

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9N2C|1|16|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2C_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0575

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9N2C|1|16|G|259
9N2C|1|16|G|260
9N2C|1|16|U|261
9N2C|1|16|A|262
9N2C|1|16|A|263
9N2C|1|16|C|264
9N2C|1|16|G|265
9N2C|1|16|G|266
9N2C|1|16|C|267

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnH operon

Nearby chains

Chain SQ

30S ribosomal protein S17

Chain ST

30S ribosomal protein S20