HL_9N2C_025

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9N2C|1|16|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2C_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0635

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9N2C|1|16|G|1089
9N2C|1|16|U|1090
9N2C|1|16|U|1091
9N2C|1|16|A|1092
9N2C|1|16|A|1093
9N2C|1|16|G|1094
9N2C|1|16|U|1095
9N2C|1|16|C|1096

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnH operon

Nearby chains

Chain SB

30S ribosomal protein S2

Chain SG

30S ribosomal protein S7

Chain SU

30S ribosomal protein S21