HL_9N2C_095

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9N2C|1|23|G|2751, 9N2C|1|23|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2C_095 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0629

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9N2C|1|23|C|2745
9N2C|1|23|U|2746
9N2C|1|23|G|2747
9N2C|1|23|A|2748
9N2C|1|23|A|2749
9N2C|1|23|A|2750
9N2C|1|23|G|2751
9N2C|1|23|C|2752
9N2C|1|23|A|2753
9N2C|1|23|U|2754
9N2C|1|23|C|2755
9N2C|1|23|U|2756
9N2C|1|23|A|2757
9N2C|1|23|A|2758
9N2C|1|23|G|2759

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LF

50S ribosomal protein L6

Chain LM

50S ribosomal protein L13

Chain Lj

50S ribosomal protein L36