HL_9N3I_005

3D structure

PDB id

9N3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vibrio cholerae Glycine Riboswitch - glycine bound at 2.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GCAUAU

Length

6 nucleotides

Bulged bases

9N3I|1|A|U|193, 9N3I|1|A|A|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N3I_005 not in the Motif Atlas

Geometric match to HL_5UD5_001

Geometric discrepancy: 0.3085

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9N3I|1|A|G|190
9N3I|1|A|C|191
9N3I|1|A|A|192
9N3I|1|A|U|193
9N3I|1|A|A|194
9N3I|1|A|U|195

Current chains

Chain A

Glycine Riboswitch

Nearby chains