RNA 3D Hub //

9N3I Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9N3I_0021/A/72:78No text annotation
geometric
HL_8OI5_038
HL_34789.6
HL_9N3I_0041/A/158:165T-loop related
geometric
HL_3R4F_001
HL_63894.4

Problematic loops

#loop idProblemSequence
HL_9N3I_001No text annotation
HL_9N3I_003No text annotation
HL_9N3I_005tRNA D-loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9N3I_0011/A/3:10,
1/A/135:139		Kink-turn
geometric
IL_8B0X_107
IL_90775.3
IL_9N3I_0021/A/22:24,
1/A/61:62		Single bulged U
geometric
IL_3TZR_002
IL_97561.7
IL_9N3I_0041/A/65:69,
1/A/82:84		No text annotation
geometric
IL_3OXE_002
IL_70784.2
IL_9N3I_0051/A/69:70,
1/A/80:82		Major groove platform
geometric
IL_3OXE_003
IL_48076.10
IL_9N3I_0061/A/88:90,
1/A/120:121		No text annotation
geometric
IL_8B0X_086
IL_15011.5
IL_9N3I_0091/A/153:155,
1/A/168:169		Single bulged A
geometric
IL_8XZL_003
IL_14190.4
IL_9N3I_0101/A/172:176,
1/A/211:213		No text annotation
homologous
IL_3OXE_002
IL_70784.2
IL_9N3I_0111/A/176:177,
1/A/209:211		Major groove platform
homologous
IL_3OXE_003
IL_48076.10
IL_9N3I_0121/A/179:183,
1/A/202:207		UAA/GAN with extra stack
homologous
IL_3OXE_004
IL_78154.1

Problematic loops

#loop idProblemSequence
IL_9N3I_003No text annotation
IL_9N3I_007Isolated non-canonical cWW pair
IL_9N3I_008Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9N3I_0011/A/148:153,
1/A/169:170,
1/A/215:223		No text annotation
homologous
J3_3OXE_001
J3_58957.1
J4_9N3I_0011/A/17:22,
1/A/62:63,
1/A/86:87,
1/A/122:128		No text annotation

Problematic loops

No problematic loops


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