HL_9N6W_008

3D structure

PDB id

9N6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State A*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGUAAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N6W_008 not in the Motif Atlas

Geometric match to HL_9DFE_020

Geometric discrepancy: 0.1801

The information below is about HL_9DFE_020

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9N6W|1|L0|U|514
9N6W|1|L0|G|515
9N6W|1|L0|U|516
9N6W|1|L0|A|517
9N6W|1|L0|A|518
9N6W|1|L0|A|519
9N6W|1|L0|A|520
9N6W|1|L0|G|521

Current chains

Chain L0

5'ETS rRNA

Nearby chains

Chain LU

Protein SOF1

Chain SP

U3 small nucleolar RNA-associated protein 20