HL_9N6Z_016

3D structure

PDB id

9N6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State D

Experimental method

ELECTRON MICROSCOPY

Resolution

4.74 Å

Loop

Sequence

GGUGAAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N6Z_016 not in the Motif Atlas

Geometric match to HL_3HHN_010

Geometric discrepancy: 0.2212

The information below is about HL_3HHN_010

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.6

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9N6Z|1|L1|G|901
9N6Z|1|L1|G|902
9N6Z|1|L1|U|903
9N6Z|1|L1|G|904
9N6Z|1|L1|A|905
9N6Z|1|L1|A|906
9N6Z|1|L1|A|907
9N6Z|1|L1|U|908

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NG

40S ribosomal protein S14-A