9N6Z Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9N6Z_014 | 1/L1/561:566 | No text annotation | ||
| HL_9N6Z_019 | 1/L1/1129:1139 | No text annotation | ||
| HL_9N6Z_020 | 1/L1/1594:1602 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9N6Z_001 | GNRA related | ||
| HL_9N6Z_002 | Mini UNCG | ||
| HL_9N6Z_003 | No text annotation | ||
| HL_9N6Z_004 | No text annotation | ||
| HL_9N6Z_005 | No text annotation | ||
| HL_9N6Z_006 | No text annotation | ||
| HL_9N6Z_007 | No text annotation | ||
| HL_9N6Z_008 | No text annotation | ||
| HL_9N6Z_009 | No text annotation | ||
| HL_9N6Z_010 | No text annotation | ||
| HL_9N6Z_011 | No text annotation | ||
| HL_9N6Z_012 | No text annotation | ||
| HL_9N6Z_013 | No text annotation | ||
| HL_9N6Z_015 | No text annotation | ||
| HL_9N6Z_016 | GNRA with tandem sheared | ||
| HL_9N6Z_017 | No text annotation | ||
| HL_9N6Z_018 | No text annotation | ||
| HL_9N6Z_021 | No text annotation | ||
| HL_9N6Z_022 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9N6Z_018 | 1/L1/265:267, 1/L1/288:289 | Single bulged A | homologous IL_9PN5_156 IL_14190.5 | |
| IL_9N6Z_029 | 1/L1/514:516, 1/L1/536:543 | No text annotation | homologous IL_9PN5_168 IL_02511.3 | |
| IL_9N6Z_032 | 1/L1/551:552, 1/L1/584:587 | No text annotation | geometric IL_8B0X_156 IL_44609.5 | |
| IL_9N6Z_033 | 1/L1/552:559, 1/L1/568:584 | No text annotation | ||
| IL_9N6Z_035 | 1/L1/627:631, 1/L1/968:972 | No text annotation | homologous IL_9PN5_176 IL_05821.4 | |
| IL_9N6Z_041 | 1/L1/874:878, 1/L1/950:953 | Tandem non-canonical cWW pairs | homologous IL_9PN5_185 IL_15225.5 | |
| IL_9N6Z_046 | 1/L1/1041:1044, 1/L1/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_9H3G_206 IL_15225.5 | |
| IL_9N6Z_048 | 1/L1/1117:1119, 1/L2/6:7 | Single bulged G | geometric IL_9H3G_012 IL_28408.5 | |
| IL_9N6Z_066 | 1/L2/85:96, 1/L2/320:325 | No text annotation | ||
| IL_9N6Z_068 | 1/L2/111:115, 1/L2/252:259 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9N6Z_001 | Single bulged G | ||
| IL_9N6Z_002 | No text annotation | ||
| IL_9N6Z_003 | Single bulged C | ||
| IL_9N6Z_004 | Isolated non-canonical cWW pair | ||
| IL_9N6Z_005 | No text annotation | ||
| IL_9N6Z_006 | Minor groove platform | ||
| IL_9N6Z_007 | No text annotation | ||
| IL_9N6Z_008 | No text annotation | ||
| IL_9N6Z_009 | Tandem non-canonical cWW pairs | ||
| IL_9N6Z_010 | No text annotation | ||
| IL_9N6Z_011 | No text annotation | ||
| IL_9N6Z_012 | No text annotation | ||
| IL_9N6Z_013 | Isolated cWH basepair | ||
| IL_9N6Z_014 | No text annotation | ||
| IL_9N6Z_015 | No text annotation | ||
| IL_9N6Z_016 | Isolated non-canonical cWW pair | ||
| IL_9N6Z_017 | Isolated non-canonical cWW pair | ||
| IL_9N6Z_019 | No text annotation | ||
| IL_9N6Z_020 | Single bulged U | ||
| IL_9N6Z_021 | Kink-turn with non-sequential stacking | ||
| IL_9N6Z_022 | No text annotation | ||
| IL_9N6Z_023 | Isolated non-canonical cWW pair | ||
| IL_9N6Z_024 | Isolated non-canonical cWW pair | ||
| IL_9N6Z_025 | Single bulged U | ||
| IL_9N6Z_026 | No text annotation | ||
| IL_9N6Z_027 | Single bulged G | ||
| IL_9N6Z_028 | Single bulged A | ||
| IL_9N6Z_030 | Minor groove platform | ||
| IL_9N6Z_031 | Minor groove platform | ||
| IL_9N6Z_034 | Isolated non-canonical cWW pair | ||
| IL_9N6Z_036 | Minor groove platform | ||
| IL_9N6Z_037 | Isolated non-canonical cWW pair | ||
| IL_9N6Z_038 | Major groove platform; stack outside cWW | ||
| IL_9N6Z_039 | Single bulged U | ||
| IL_9N6Z_040 | Isolated non-canonical cWW pair | ||
| IL_9N6Z_042 | Tandem non-canonical cWW pairs | ||
| IL_9N6Z_043 | No text annotation | ||
| IL_9N6Z_044 | No text annotation | ||
| IL_9N6Z_045 | Tandem non-canonical cWW pairs | ||
| IL_9N6Z_047 | Single stack bend | ||
| IL_9N6Z_049 | No text annotation | ||
| IL_9N6Z_050 | No text annotation | ||
| IL_9N6Z_051 | Minor groove platform | ||
| IL_9N6Z_052 | Isolated non-canonical cWW pair | ||
| IL_9N6Z_053 | Single bulged U | ||
| IL_9N6Z_054 | Single bulged A | ||
| IL_9N6Z_055 | Isolated non-canonical cWW pair | ||
| IL_9N6Z_056 | Tandem non-canonical cWW pairs | ||
| IL_9N6Z_057 | Single bulged U | ||
| IL_9N6Z_058 | No text annotation | ||
| IL_9N6Z_059 | Double sheared | ||
| IL_9N6Z_060 | Isolated non-canonical cWW pair | ||
| IL_9N6Z_061 | Tandem non-canonical cWW pairs | ||
| IL_9N6Z_062 | No text annotation | ||
| IL_9N6Z_063 | Isolated cWH basepair | ||
| IL_9N6Z_064 | Isolated cWH basepair | ||
| IL_9N6Z_065 | No text annotation | ||
| IL_9N6Z_067 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9N6Z_003 | 1/L1/881:884, 1/L1/928:936, 1/L1/943:947 | No text annotation | homologous J3_9H3G_033 NA | |
| J5_9N6Z_001 | 1/L1/31:35, 1/L1/473:479, 1/L1/509:514, 1/L1/543:546, 1/L1/592:595 | No text annotation | homologous J5_9H3G_007 J5_04786.3 | |
| J5_9N6Z_002 | 1/L1/31:35, 1/L1/473:479, 1/L1/509:516, 1/L1/536:546, 1/L1/592:595 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9N6Z_001 | No text annotation | ||
| J3_9N6Z_002 | No text annotation | ||
| J3_9N6Z_004 | No text annotation | ||
| J3_9N6Z_005 | No text annotation | ||
| J5_9N6Z_003 | No text annotation |
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