HL_9N70_003

3D structure

PDB id

9N70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State E

Experimental method

ELECTRON MICROSCOPY

Resolution

5.17 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

9N70|1|L1|U|159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N70_003 not in the Motif Atlas

Homologous match to HL_9PN5_079

Geometric discrepancy: 0.408

The information below is about HL_9PN5_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9N70|1|L1|G|154
9N70|1|L1|U|155
9N70|1|L1|A|156
9N70|1|L1|A|157
9N70|1|L1|U|158
9N70|1|L1|U|159
9N70|1|L1|C|160

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L6

40S ribosomal protein S6-A

Chain LF

40S ribosomal protein S24-A

Chain LX

RNA cytidine acetyltransferase