9N70 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9N70_013 | 1/L1/561:566 | No text annotation | ||
| HL_9N70_019 | 1/L1/1129:1139 | No text annotation | ||
| HL_9N70_020 | 1/L1/1594:1602 | No text annotation | ||
| HL_9N70_021 | 1/L1/1629:1636 | No text annotation | geometric HL_8K1E_001 HL_97725.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9N70_001 | GNRA related | ||
| HL_9N70_002 | No text annotation | ||
| HL_9N70_003 | No text annotation | ||
| HL_9N70_004 | No text annotation | ||
| HL_9N70_005 | No text annotation | ||
| HL_9N70_006 | No text annotation | ||
| HL_9N70_007 | No text annotation | ||
| HL_9N70_008 | No text annotation | ||
| HL_9N70_009 | No text annotation | ||
| HL_9N70_010 | No text annotation | ||
| HL_9N70_011 | No text annotation | ||
| HL_9N70_012 | No text annotation | ||
| HL_9N70_014 | No text annotation | ||
| HL_9N70_015 | No text annotation | ||
| HL_9N70_016 | No text annotation | ||
| HL_9N70_017 | No text annotation | ||
| HL_9N70_018 | No text annotation | ||
| HL_9N70_022 | No text annotation | ||
| HL_9N70_023 | Mini UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9N70_025 | 1/L1/443:447, 1/L1/460:461 | No text annotation | homologous IL_9PN5_165 IL_26900.4 | |
| IL_9N70_028 | 1/L1/514:516, 1/L1/536:543 | No text annotation | homologous IL_9PN5_168 IL_02511.3 | |
| IL_9N70_031 | 1/L1/551:552, 1/L1/584:587 | No text annotation | geometric IL_8B0X_156 IL_44609.5 | |
| IL_9N70_032 | 1/L1/552:559, 1/L1/568:584 | No text annotation | ||
| IL_9N70_036 | 1/L1/868:869, 1/L1/958:960 | Single bulged U | geometric IL_8OI5_056 IL_97561.8 | |
| IL_9N70_043 | 1/L1/1034:1036, 1/L1/1095:1101 | No text annotation | homologous IL_9H3G_205 IL_82706.5 | |
| IL_9N70_045 | 1/L1/1051:1053, 1/L1/1066:1067 | Single stack bend | homologous IL_9H3G_207 IL_15011.6 | |
| IL_9N70_047 | 1/L1/1157:1160, 1/L1/1617:1621 | No text annotation | homologous IL_9H3G_212 IL_63596.15 | |
| IL_9N70_065 | 1/L2/111:115, 1/L2/252:259 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9N70_001 | Single bulged G | ||
| IL_9N70_002 | Single bulged C | ||
| IL_9N70_003 | Isolated non-canonical cWW pair | ||
| IL_9N70_004 | No text annotation | ||
| IL_9N70_005 | Minor groove platform | ||
| IL_9N70_006 | No text annotation | ||
| IL_9N70_007 | No text annotation | ||
| IL_9N70_008 | Tandem non-canonical cWW pairs | ||
| IL_9N70_009 | No text annotation | ||
| IL_9N70_010 | No text annotation | ||
| IL_9N70_011 | No text annotation | ||
| IL_9N70_012 | Isolated cWH basepair | ||
| IL_9N70_013 | No text annotation | ||
| IL_9N70_014 | No text annotation | ||
| IL_9N70_015 | Isolated non-canonical cWW pair | ||
| IL_9N70_016 | Isolated non-canonical cWW pair | ||
| IL_9N70_017 | Single bulged A | ||
| IL_9N70_018 | No text annotation | ||
| IL_9N70_019 | Single bulged U | ||
| IL_9N70_020 | Kink-turn with non-sequential stacking | ||
| IL_9N70_021 | No text annotation | ||
| IL_9N70_022 | Isolated non-canonical cWW pair | ||
| IL_9N70_023 | Isolated non-canonical cWW pair | ||
| IL_9N70_024 | Single bulged U | ||
| IL_9N70_026 | Single bulged G | ||
| IL_9N70_027 | Single bulged A | ||
| IL_9N70_029 | Minor groove platform | ||
| IL_9N70_030 | Minor groove platform | ||
| IL_9N70_033 | Isolated non-canonical cWW pair | ||
| IL_9N70_034 | No text annotation | ||
| IL_9N70_035 | Major groove platform; stack outside cWW | ||
| IL_9N70_037 | Tandem non-canonical cWW pairs | ||
| IL_9N70_038 | Tandem non-canonical cWW pairs | ||
| IL_9N70_039 | Tandem non-canonical cWW pairs | ||
| IL_9N70_040 | No text annotation | ||
| IL_9N70_041 | No text annotation | ||
| IL_9N70_042 | No text annotation | ||
| IL_9N70_044 | Tandem non-canonical cWW pairs | ||
| IL_9N70_046 | Single bulged G | ||
| IL_9N70_048 | Isolated non-canonical cWW pair | ||
| IL_9N70_049 | Isolated non-canonical cWW pair | ||
| IL_9N70_050 | Single bulged U | ||
| IL_9N70_051 | Single bulged A | ||
| IL_9N70_052 | Isolated non-canonical cWW pair | ||
| IL_9N70_053 | Tandem non-canonical cWW pairs | ||
| IL_9N70_054 | Single bulged U | ||
| IL_9N70_055 | No text annotation | ||
| IL_9N70_056 | Double sheared | ||
| IL_9N70_057 | Isolated non-canonical cWW pair | ||
| IL_9N70_058 | Tandem non-canonical cWW pairs | ||
| IL_9N70_059 | No text annotation | ||
| IL_9N70_060 | Isolated cWH basepair | ||
| IL_9N70_061 | Isolated cWH basepair | ||
| IL_9N70_062 | No text annotation | ||
| IL_9N70_063 | No text annotation | ||
| IL_9N70_064 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9N70_003 | 1/L1/881:884, 1/L1/928:936, 1/L1/943:947 | No text annotation | homologous J3_9H3G_033 NA | |
| J5_9N70_001 | 1/L1/31:35, 1/L1/473:479, 1/L1/509:514, 1/L1/543:546, 1/L1/592:595 | No text annotation | homologous J5_9H3G_007 J5_04786.3 | |
| J5_9N70_002 | 1/L1/31:35, 1/L1/473:479, 1/L1/509:516, 1/L1/536:546, 1/L1/592:595 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9N70_001 | No text annotation | ||
| J3_9N70_002 | No text annotation | ||
| J3_9N70_004 | No text annotation | ||
| J3_9N70_005 | No text annotation | ||
| J3_9N70_006 | No text annotation | ||
| J3_9N70_007 | No text annotation | ||
| J3_9N70_008 | No text annotation | ||
| J4_9N70_001 | No text annotation | ||
| J5_9N70_003 | No text annotation |
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