HL_9N70_009

3D structure

PDB id

9N70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State E

Experimental method

ELECTRON MICROSCOPY

Resolution

5.17 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9N70|1|L1|A|416

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N70_009 not in the Motif Atlas

Homologous match to HL_9H3G_087

Geometric discrepancy: 0.1904

The information below is about HL_9H3G_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9N70|1|L1|C|414
9N70|1|L1|C|415
9N70|1|L1|A|416
9N70|1|L1|A|417
9N70|1|L1|G|418
9N70|1|L1|G|419

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L6

40S ribosomal protein S6-A

Chain LX

RNA cytidine acetyltransferase

Chain SI

Ribosome biogenesis protein BMS1